NCBI
The National Center for Biotechnology Information advances science and
health by providing access to biomedical and genomic information.
TCGA
The Cancer Genome Atlas, a landmark cancer genomics program,
molecularly characterized over 20,000 primary cancer and matched normal samples
spanning 33 cancer types. TCGA generated over 2.5 petabytes of genomic, epigenomic,
transcriptomic, and proteomic data. The data has already led to improvements
in our ability to diagnose, treat, and prevent cancer, will remain publicly available for
anyone in the research community to use.
Uniprot
UniProt is the world’s leading high-quality, comprehensive and freely accessible resource
of protein sequence and functional information.
Pubmed
PubMed is a free resource supporting the search and retrieval of biomedical and
life sciences literature with the aim of improving health–both globally and personally.
GeneCards
GeneCards is a searchable, integrative database that provides comprehensive,
user-friendly information on all annotated and predicted human genes.
The knowledgebase automatically integrates gene-centric data from ~150 web
sources, including genomic, transcriptomic, proteomic, genetic, clinical and
functional information.
Software Links
Seurat
Seurat is an R package designed for QC, analysis, and exploration of single-cell
RNA-seq data. Seurat aims to enable users to identify and interpret sources of
heterogeneity from single-cell transcriptomic measurements, and to integrate diverse
types of single-cell data.
Cell Ranger
Cell Ranger is a set of analysis pipelines that process Chromium single cell
data to align reads, generate feature-barcode matrices, perform clustering and
other secondary analysis, and more.
